Using Arduino with Matlab GUI

Projects Programming
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Hi I am on a project which controls DC motors with Matlab gui. I watched about 10 videos on YouTube and read all Matlab documentayion. Unfortunately I couldnt understand the concept completely. For this purpose
1- could you share with me good documents or videos that I miss?
2- why generally people directly command ardunio with "Writedigitalpin..." Rather than send parameters to existing Arduino code?
3- i want to control my motor continuesly.so Where should I print the codes. Is there any loop function Matlab GUI?
4 - when i send a code to Arduino what happened to original code in Arduino? All gone?
5- what is handles.xxx stuff?

Thank you

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