avrdude: Yikes! Invalid device signature.

Today I am using a Arduino Uno to flush my own design based on ATmega32u4. But I got the problem shows "avrdude: Yikes! Invalid device signature.".

Could some help me to solve?

The wiring refers to this:

The step I did is:

  1. Connect Arduino UNO, flushing with a empty sketch.
  2. Download ArduinoISP for Arduino UNO.
  3. Change board to Arduino Leonardo and select Arduino as IPS
  4. Burn Bootloader

and then I had problem:

avrdude: Yikes! Invalid device signature.
Double check connections and try again, or use -F to override
this check.

Error while burning bootloader.

(deleted)

Please do this:

  • File > Preferences > Show verbose output during: > compilation (uncheck) > upload (check) > OK
  • Tools > Burn Bootloader
  • After the process fails you'll see a button on the right side of the orange bar "Copy error messages". Click that button.
  • Paste the error messages in a reply here USING CODE TAGS (</> button on the toolbar).

pert:
Please do this:

  • File > Preferences > Show verbose output during: > compilation (uncheck) > upload (check) > OK
  • Tools > Burn Bootloader
  • After the process fails you'll see a button on the right side of the orange bar "Copy error messages". Click that button.
  • Paste the error messages in a reply here USING CODE TAGS (</> button on the toolbar).

After followed some instructions on the forum, I tired to upload an empty file before the ArduinoISP example, I burned the bootloader successfully.

Here is the information I have.

avrdude: Version 6.3, compiled on Jan 17 2017 at 12:00:53
         Copyright (c) 2000-2005 Brian Dean, http://www.bdmicro.com/
         Copyright (c) 2007-2014 Joerg Wunsch

         System wide configuration file is "C:\Program Files\WindowsApps\ArduinoLLC.ArduinoIDE_1.8.10.0_x86__mdqgnx93n4wtt\hardware\tools\avr/etc/avrdude.conf"

         Using Port                    : COM5
         Using Programmer              : stk500v1
         Overriding Baud Rate          : 19200
         AVR Part                      : ATmega32U4
         Chip Erase delay              : 9000 us
         PAGEL                         : PD7
         BS2                           : PA0
         RESET disposition             : dedicated
         RETRY pulse                   : SCK
         serial program mode           : yes
         parallel program mode         : yes
         Timeout                       : 200
         StabDelay                     : 100
         CmdexeDelay                   : 25
         SyncLoops                     : 32
         ByteDelay                     : 0
         PollIndex                     : 3
         PollValue                     : 0x53
         Memory Detail                 :

                                  Block Poll               Page                       Polled
           Memory Type Mode Delay Size  Indx Paged  Size   Size #Pages MinW  MaxW   ReadBack
           ----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
           eeprom        65    20     4    0 no       1024    4      0  9000  9000 0x00 0x00
           flash         65     6   128    0 yes     32768  128    256  4500  4500 0x00 0x00
           lfuse          0     0     0    0 no          1    0      0  9000  9000 0x00 0x00
           hfuse          0     0     0    0 no          1    0      0  9000  9000 0x00 0x00
           efuse          0     0     0    0 no          1    0      0  9000  9000 0x00 0x00
           lock           0     0     0    0 no          1    0      0  9000  9000 0x00 0x00
           calibration    0     0     0    0 no          1    0      0     0     0 0x00 0x00
           signature      0     0     0    0 no          3    0      0     0     0 0x00 0x00

         Programmer Type : STK500
         Description     : Atmel STK500 Version 1.x firmware
         Hardware Version: 2
         Firmware Version: 1.18
         Topcard         : Unknown
         Vtarget         : 0.0 V
         Varef           : 0.0 V
         Oscillator      : Off
         SCK period      : 0.1 us

avrdude: AVR device initialized and ready to accept instructions

Reading | ################################################## | 100% 0.02s

avrdude: Device signature = 0x1e9587 (probably m32u4)
avrdude: NOTE: "flash" memory has been specified, an erase cycle will be performed
         To disable this feature, specify the -D option.
avrdude: erasing chip
avrdude: reading input file "C:\Program Files\WindowsApps\ArduinoLLC.ArduinoIDE_1.8.10.0_x86__mdqgnx93n4wtt\hardware\arduino\avr/bootloaders/caterina/Caterina-Leonardo.hex"
avrdude: writing flash (32730 bytes):

Writing | ################################################## | 100% 35.65s

avrdude: 32730 bytes of flash written
avrdude: verifying flash memory against C:\Program Files\WindowsApps\ArduinoLLC.ArduinoIDE_1.8.10.0_x86__mdqgnx93n4wtt\hardware\arduino\avr/bootloaders/caterina/Caterina-Leonardo.hex:
avrdude: load data flash data from input file C:\Program Files\WindowsApps\ArduinoLLC.ArduinoIDE_1.8.10.0_x86__mdqgnx93n4wtt\hardware\arduino\avr/bootloaders/caterina/Caterina-Leonardo.hex:
avrdude: input file C:\Program Files\WindowsApps\ArduinoLLC.ArduinoIDE_1.8.10.0_x86__mdqgnx93n4wtt\hardware\arduino\avr/bootloaders/caterina/Caterina-Leonardo.hex contains 32730 bytes
avrdude: reading on-chip flash data:

Reading | ################################################## | 100% 19.92s

avrdude: verifying ...
avrdude: 32730 bytes of flash verified
avrdude: reading input file "0x2F"
avrdude: writing lock (1 bytes):

Writing | ################################################## | 100% 0.02s

avrdude: 1 bytes of lock written
avrdude: verifying lock memory against 0x2F:
avrdude: load data lock data from input file 0x2F:
avrdude: input file 0x2F contains 1 bytes
avrdude: reading on-chip lock data:

Reading | ################################################## | 100% 0.01s

avrdude: verifying ...
avrdude: 1 bytes of lock verified

avrdude done.  Thank you.

But after this, I find that the PC does not recognize my board when I connected it with a Micro USB cable(This cable works well with other Leonardo boatds. So what should I do?

PCB design is shown as following: